2009 |
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Acuña, V., F. Chierichetti, V. Lacroix, A. Marchetti-Spaccamela, M. F. Sagot, and L. S. "Modes and cuts in metabolic networks: Complexity and algorithms." Biosystems 95, no. 1 (2009): 51–60.
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Adi, S. S., M. D. V. Braga, C. G. Fernandes, C. E. Ferreira, F. V. Martinez, M. F. Sagot, M. A. Stefanes, C. Tjandraatmadja, and Y. Wakabayashi. "Repetition-free longest common subsequence." Discr. Appl. Math. (2009).
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Bernasconi, G., J. Antonovics, A. Biere, D. Charlesworth, L. Delph, D. Filatov, T. Giraud, M. Hood, G. Marais, D. McCauley et al. "Silene as a model system in ecology and evolution." Heredity 103 (2009): 5–14.
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Braga, M. "baobabLUNA: the solution space of sorting by reversals." Bioinformatics 25 (2009): 1833–1835.
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Braga, M. D. V. "Exploring the solution space of sorting by reversals when analyzing genome rearrangements." Ph.D. thesis, Université Claude Bernard Lyon 1, 2009.
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Cottret, L. "Analyse systémique de la symbiose intracellulaire : Évolution et organisation du réseau métabolique des endocytobiotes." Ph.D. thesis, Université Claude Bernard Lyon 1, 2009.
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Deloger, M., F. Cavalli, E. Lerat, C. Biémont, M. F. Sagot, and C. Vieira. "Identification of expressed transposable element insertions in the sequenced genome of Drosophila melanogaster." Gene 439 (2009): 55–62.
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Deniélou, Y. P., F. Boyer, M. F. Sagot, and A. Viari. "Multiple Alignment of Biological Networks: A Flexible Approach." In Cpm09, 173–185. Lecture Notes in Computer Science 5542. Springer-Verlag, 2009.
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Fablet, M., E. Lerat, R. Rebollo, B. Horard, N. Burlet, S. Martinez, E. Brasset, E. Gilson, C. Vaury, and C. Vieira. "Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila." Fasep J. 23 (2009): 54–62.
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Fertin, G., A. Labarre, I. Rusu, E. Tannier, and S. Vialette. Combinatorics of Genome Rearrangements. MIT Press, 2009.
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Gout, J. F., L. Duret, and D. Kahn. "Differential retention of metabolic genes following whole-genome duplication." Mol. Biol. Evol. 26 (2009): 1067–1072.
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Hunter, S., R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, D. Binns, P. Bork, U. Das, L. Daugherty, L. Duquenne et al. "InterPro: the integrative protein signature database." Nucleic Acids Res. 37 (Database Issue) (2009): 224–228.
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Lemaitre, C., M. Braga, C. Gautier, M. F. Sagot, E. Tannier, and G. Marais. "Footprints of Inversions at Present and Past Pseudoautosomal Boundaries in Human Sex Chromosomes." Genome Biol. Evol. 1 (2009): 56–66.
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Lemaitre, C., L. Zaghloul, M. F. Sagot, C. Gautier, A. Arneodo, E. Tannier, and B. Audit. "Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation." BMC Genomics 10 (2009): 335.
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Mendes, N., A. Freitas, and M. F. Sagot. "Current tools for the identification of miRNA genes and their targets." Nucleic Acids Res. 37 (2009): 2419–2433.
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Moccia, M., C. Oger-Desfeux, G. Marais, and A. Widmer. "A White Campion Silene latifolia floral expressed sequence tag (EST) library: annotation EST-SSR characterization transferability and utility for comparative mapping." BMC Genomics 10 (2009): 1–14.
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Navratil, V., B. de Chassey, L. Meyniel, S. Delmotte, C. Gautier, P. Andre, V. Lotteau, and C. Rabourdin-Combe. "VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks." Nucleic Acids Res. 37 (2009): 661.
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Ouangraoua, A., F. Boyer, A. McPherson, E. Tannier, and C. Chauve. "Prediction of Contiguous Regions in the Amniote Ancestral Genome." In Isbra Yy09, 173–185. Lecture Notes in Bioinformatics (LNCS) 5542. Springer Verlag, 2009.
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Penel, S., A. M. Arigon, J. F. Dufayard, A. S. Sertier, V. Daubin, L. Duret, M. Gouy, and G. Perrière. "Databases of homologous gene families for comparative genomics." BMC Bioinformatics 10 (2009): 1–13.
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Peterlongo, P., G. Sacomoto, A. P. do Lago, N. Pisanti, and M. F. Sagot. "Lossless filter for multiple repeats with bounded edit distance." Algorithms Mol. Biol. 4 (2009): 3.
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Picard, F., V. Miele, J. Daudin, L. Cottret, and S. Robin. "Deciphering the connectivity structure of biological networks using MixNet." BMC Bioinformatics 10 (2009): 1–11.
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Schbath, S., V. Lacroix, and M. F. Sagot. "Assessing the exceptionality of coloured motifs in networks." Eurasip J. Bioinform. Syst. Biol. 1 (2009): 1–9.
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Tannier, E., C. Zheng, and D. Sankoff. "Multichromosomal median and halving problems under different genomic distances." BMC Bioinformatics 10 (2009): 1–15.
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Vieira, C., M. Fablet, and E. Lerat. "Infra- and Transspecific Clues to Understanding the Dynamics of Transposable Elements." In Genome Dyn. Stab., 115–123. Springer Verlag, 2009.
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2009
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