Page in construction.
| Name | Main implementer | Brief description | |
| C3P | Frédéric Boyer | C3P is a package to compute the Common Connected Components (CCC) of a several graphs representing biological data. Applications in bioinformatics range from micro syntenies to generic graphs alignements problems. | |
| Motus | Vincent Lacroix | Coloured motif search and inference in vertex coloured graphs such as metabolic networks and interaction networks (see also the web version for more features). | |
| PBsR | Yoan Diekmann | Algorithm for deciding, given a permutation, if there exists a minimum scenario of reversals that is perfect. | |
| MetaViz | Fabien Jourdan, Vincent Lacroix, Ludovic Cottret, with Romain Bourqui (main developer), David Auber (Romain’s supervisor), Patrick Mary (LABRI) | Visualisation software for metabolic network. | |
| PepLine | Alain Viari | Pepline is a fully automated software to map MS/MS fragmentation spectra of enzymatic digested peptides to genomic DNA sequences. The approach is based on Peptide Sequence Tags (PSTs) resulting from partial interpretation of the MS/MS spectra | |
| Pitufo | Ludovic Cottret, Paulo Vieira Milreu, Vicente Acuña | First version of algorithm for enumerating all minimal precursor sets for a given set of metabolic targets. | |
| Cassis | Christian Baudet, Claire Lemaitre | Algorithm for precise detection of rearrangement breakpoints. |
