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Abby, S., M. Gouy, and V. Daubin. "Des milliers darbres de gËnes pour reconstruire lhistoire du vivant." In JournÈes Ouvertes : Biologie Informatique et MathÈmatiques (JOBIM)., 2006.
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Acuña, V., G. Didier, and A. Maass. "Coding with variable block maps." Theor. Comput. Sci. 369 (2006): 396–405.
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Allali, J., Y. dAubenton-Carafa, C. Thermes, and M. F. Sagot. "MiGaL: an efficient tool for RNA secondary structures comparison." In JournÈes Ouvertes : Biologie Informatique et MathÈmatiques (JOBIM)., 2006.
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Aouacheria, A., V. Navratil, A. Barthelaix, D. Mouchiroud, and C. Gautier. "Bioinformatic screening of human ESTs for differentially expressed genes in normal and tumor tissues." BMC Genomics 7 (2006): 94.
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Arigon, A. M. "Développement doutils pour laide et lidentification dans de grandes banques de familles de gènes." Ph.D. thesis, Université Claude Bernard Lyon 1, 2006.
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Arigon, A. M., G. Perrière, and M. Gouy. "HoSeqI: automated homologous sequence identification in gene family databases." Bioinformatics 22(14) (2006): 1786–1787.
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Bourqui, R., D. Auber, V. Lacroix, and F. Jourdan. "Metabolic network visualization using a constraint planar graph drawing." In Information Visualization, 489–496., 2006.
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Boussau, B., and M. Gouy. "Efficient Likelihood Computations with Nonreversible Models of Evolution." Syst. Biol. 55(5) (2006): 756–768.
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Carvalho, A. M., A. Freitas, A. L. Oliveira, and M. F. Sagot. "An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences." IEEE/ACM Trans. Comput. Biol. Bioinform. 3 (2006): 126–140.
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Clément, Y., R. Tavares, and G. Marais. "Does lack of recombination enhance asymmetric evolution among duplicate genes?: Insights from the Drosophila melanogaster genome." Gene 385 (2006): 89–95.
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Crochemore, M., C. Iliopoulos, M. Mohamed, and M. F. Sagot. "Longest Repeats with a Block of $k$ Dont Cares." Theor. Comput. Sci. 362 (2006): 248–254.
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Daudin, J. J., V. Lacroix, F. Picard, S. Robin, and M. F. Sagot. "Uncovering structure in biological networks." In JournÈes Ouvertes : Biologie Informatique et MathÈmatiques (JOBIM)., 2006.
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Descorps Declère, S. "Modélisation du processus dannotation par une architecture blackboard." Ph.D. thesis, Université Pierre et Marie Curie (Paris VI), 2006.
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Descorps-Declere, S., D. Ziebelin, F. Rechenmann, and A. Viari. "Genepi: a blackboard framework for genome annotation." BMC Bioinformatics 7 (2006): 450–462.
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Drulhe, S., G. Ferrari-Trecate, H. de Jong, and A. Viari. "Reconstruction of switching thresholds in piecewise-affine models of genetic regulatory networks." In Hscc, edited by J. Hespanha and A. Tiwara, 184–199. Lecture Notes in Computer Science 3927. Springer-Verlag, 2006.
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Durand, P., L. Labarre, A. Meil, J. Divol, Y. Vandenbrouck, A. Viari, and J. Wojcik. "GenoLink: a graph-based querying and browsing system for investigating the function of genes and proteins." BMC Bioinformatics 7 (2006): 21–31.
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Ebenhoh, O., T. Handorf, and D. Kahn. "Evolutionary changes of metabolic networks and their biosynthetic capacities." IET Syst. Biol. 153(5) (2006): 354–358.
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Frutos, R., A. Viari, C. Ferraz, A. Bensaid, A. Morgat, F. Boyer, E. Coissac, N. Vachiery, J. Demaille, and D. Martinez. "Comparative Genomics of Three Strains of Ehrlichia ruminantium: A Review." Ann. NY Acad. Sci. 1081 (2006): 417–433.
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Frutos, R., A. Viari, C. Ferraz, A. Morgat, S. Eychenie, Y. Kandassamy, I. Chantal, A. Bensaid, E. Coissac, N. Vachiery et al. "Comparative genomic analysis of three strains of Ehrlichia ruminantium reveals an active process of genome size plasticity." J. Bacteriol. 188 (2006): 2533–2542.
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Grassot, J., M. Gouy, G. Perriere, and G. Mouchiroud. "Origin and Molecular Evolution of Receptor Tyrosine Kinases with Immunoglobulin-Like Domains." Mol. Biol. Evol. 23(6) (2006): 1232–1241.
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Handorf, T., O. Ebenhoh, D. Kahn, and R. Heinrich. "Hierarchy of metabolic compounds based on their synthesising capacity." IET Syst. Biol. 153(5) (2006): 359–363.
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Lefebure, T., C. J. Douady, M. Gouy, and J. Gibert. "Relationship between morphological taxonomy and molecular divergence within Crustacea: Proposal of a molecular threshold to help species delimitation." Mol. Phylogenet. Evol. 40(2) (2006): 435–447.
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Lefebure, T., C. J. Douady, M. Gouy, P. Trontelj, J. Briolay, and J. Gibert. "Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments." Mol. Ecol. 15(7) (2006): 1797–1806.
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Mariadrissou, M., J. J. Daudin, V. Lacroix, V. Miele, F. Picard, S. Robin, and M. F. Sagot. "Uncovering structure in biological networks." In Riams06., 2006.
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Melodelima, C., L. Guéguen, C. Gautier, and D. Piau. "A Markovian Approach for the Analysis of the Gene Structure." In Psc06., 2006.
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Palmeira, L., L. Guéguen, and J. R. Lobry. "UV-targeted dinucleotides are not depleted in light-exposed Prokaryotic genomes." Mol. Biol. Evol. 23(11) (2006): 2214–2219.
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Peterlongo, P., J. Allali, and M. F. Sagot. "The Gapped-Factor Tree." In Psc06., 2006.
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Peterlongo, P., N. Pisanti, A. P. do Lago, and M. F. Sagot. "EdNimbus: A Lossless Filter for Long Multiple Repetitions with Edit Distance." In JournÈes Ouvertes : Biologie Informatique et MathÈmatiques (JOBIM)., 2006.
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Pisanti, N., A. Carvalho, L. Marsan, and M. F. Sagot. "RISOTTO: Fast extraction of motifs with mismatches." In Latin06, edited by J. R. Correa, A. Hevia and M. Kiwi, 757–768. Lecture Notes in Computer Science 3887. Springer-Verlag, 2006.
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Thébault, P., S. de Givry, T. Schiex, and C. Gaspin. "Combining constraint network processing and pattern matching to describe and locate structured motifs in genomic sequences." Bioinformatics 22(17) (2006): 2074–2080.
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2006
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