2005 |
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Allali, J., and M. F. Sagot. "A Multiple Graph Layers Model with Application to RNA Secondary Structures Comparison." In Spire, 348–359. Lecture Notes in Computer Science 3772., 2005.
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Allali, J., and M. F. Sagot. "A New Distance for High Level RNA Secondary Structure Comparison." IEEE/ACM Trans. Comput. Biol. Bioinform. 2, no. 1 (2005): 3–14.
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Aouacheria, A., V. Navratil, W. Wen, M. Jiang, D. Mouchiroud, C. Gautier, M. Gouy, and M. jie Zhang. "In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant." Oncogene 24, no. 40 (2005): 6133–6142.
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Aurell, H., P. Farge, H. Meugnier, M. Gouy, F. Forey, G. Lina, F. Vandenesch, J. Etienne, and S. Jarraud. "Clinical and environmental isolates of Legionella pneumophila serogroup 1 cannot be distinguished by sequence analysis of two surface protein genes and three housekeeping genes." Appl. Environ. Microbiol. 71, no. 1 (2005): 282–289.
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Boyer, F., A. Morgat, L. Labarre, J. Pothier, and A. Viari. "Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data." Bioinformatics 21, no. 23 (2005): 4209–4215.
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Calteau, A. "Relations évolutives entre les bactéries et les archées hyperthermophiles." Ph.D. thesis, Université Claude Bernard Lyon 1, 2005.
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Calteau, A., M. Gouy, and G. Perrière. "Horizontal transfer of two operons coding for hydrogenases between bacteria and archaea." J. Mol. Evol. 60, no. 5 (2005): 557–565.
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Carvalho, A. M., A. Freitas, A. L. Oliveira, and M. F. Sagot. "A highly scalable algorithm for the extraction of CIS-regulatory regions." In 3rd Asia-Pacific Bioinformatics Conference, 273–282. Imperial College Press, London, 2005.
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Charlesworth, D., B. Charlesworth, and G. Marais. "Steps in the evolution of heteromorphic sex chromosomes." Heredity 95, no. 2 (2005): 118–128.
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Dufayard, J. F., L. Duret, S. Penel, M. Gouy, F. Rechenmann, and G. Perrière. "Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases." Bioinformatics 21, no. 11 (2005): 2596–2603.
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Gueguen, L. "Sarment: Python modules for HMM analysis and partitioning of sequences." Bioinformatics 21, no. 16 (2005): 3427–3428.
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Huguet, V., M. Gouy, P. Normand, J. F. Zimpfer, and M. P. Fernandez. "Molecular phylogeny of Myricaceae: a reexamination of host-symbiont specificity." Mol. Phylogenet. Evol. 34, no. 3 (2005): 557–568.
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Iliopoulos, C. S., J. McHugh, P. Peterlongo, N. Pisanti, W. Rytter, and M. F. Sagot. "A first approach to finding common motifs with gaps." Int. J. Found. Comput. Sci. 16, no. 6 (2005): 1145–1154.
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Lacroix, V., C. G. Fernandes, and M. F. Sagot. "Reaction Motifs in Metabolic Networks." In Wabi, 178–191. Lecture Notes in Computer Science 3692., 2005.
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Marais, G., P. Nouvellet, P. D. Keightley, and B. Charlesworth. "Intron size and exon evolution in Drosophila." Genetics 170, no. 1 (2005): 481–485.
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Melodelima, C. "Développement dune approche markovienne pour lanalyse de lorganisation des génomes." Ph.D. thesis, Université Claude Bernard Lyon 1, 2005.
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Morgat, A., and E. Coissac. "La gestion des connaissances biologiques." Biofutur 251 (2005): 20–22.
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Navratil, V. "Modélisation des connaissances en génomique par une approche de cartographie comparée : Application à la détection et à lanalyse des SNPs exoniques chez les vertébrés." Ph.D. thesis, Université Claude Bernard Lyon 1, 2005.
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Nicolas, M., G. Marais, V. Hykelova, B. Janousek, V. Laporte, B. Vyskot, D. Mouchiroud, I. Negrutiu, D. Charlesworth, and F. Moneger. "A gradual process of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants." PLoS Biol. 3, no. 1 (2005): 4.
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Peterlongo, P., N. Pisanti, F. Boyer, and M. F. Sagot. "Lossless Filter for Finding Long Multiple Approximate Repetitions Using a New Data Structure, the Bi-factor Array." In Spire, 179–190. Lecture Notes in Computer Science 3772., 2005.
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Pisanti, N., and M. F. Sagot. "4.7." In Applications of Combinatorics on Words, edited by J. Berstel and D. Perrin, 227–250. Cambridge University Press, 2005.
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Pisanti, N., M. Crochemore, R. Grossi, and M. F. Sagot. "Bases of Motifs for Generating Repeated Patterns with Wild Cards." IEEE/ACM Trans. Comput. Biol. Bioinform. 2, no. 1 (2005): 40–50.
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Sagot, M. F., and E. Tannier. "Perfect Sorting by Reversals." In Cocoon, 42–51. Lecture Notes in Computer Science 3595., 2005.
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2005
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